Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Assembly of Nanopore Sequencing
Flye on Windows | De novo assembler for single molecule sequencing reads using repeat graphs
A transparent ONT bacterial assembly case study for an *Acinetobacter* barcode07 isolate, built not only to generate an assembly, but to show how raw reads become an interpretable genome through QC evidence, assembler comparison, graph checks, phylogeny, annotation, documented decisions, and honest limitations.
reproducible Snakemake pipeline for bacterial hybrid assembly.
Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).
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