All issues

Search results

Credentials with reserved characters are not percent-encoded when injected into the Mongo URI

Status: Open.

#530 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jul 27, 2026

MIxS required-slot gap report: which checklist/extension slots lack an NMDC home, weighted by submission-portal usage

Status: Open.

#491 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jun 23, 2026

Extract pure env-triad parsing helpers into a stdlib-only module

Status: Open.

#481 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jun 17, 2026

Repo bloat: stop committing generated outputs/logs; trim large tracked files

Status: Open.

#478 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jun 17, 2026

Add a smoke-test layer to catch dependency and refactor breakage

Status: Open.

#470 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jun 16, 2026

Evaluate pandas 3.x migration

backlogbacklogged to be reprioritized in the futurebacklogged to be reprioritized in the future

Status: Open.

#469 In microbiomedata/external-metadata-awareness;

· turbomam opened on Jun 16, 2026

Adopt .env-file-as-canonical-per-env-config pattern in other Makefiles

Status: Open.

#441 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 28, 2026

Document M5 Keychain credential pattern for authed local MongoDB

Status: Open.

#440 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 28, 2026

Unify MongoDB connection config across EMA pipelines

Status: Open.

#439 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 28, 2026

Framework to anticipate/discover/hypothesis-test noise patterns in biosample free-text fields

Status: Open.

#428 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 19, 2026

Extend deterministic ontology normalization beyond env_triad (isolation_source, host, geo_loc_name, Description.Title)

Status: Open.

#427 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 19, 2026

Deterministic env-triad CURIE lookup table that agents query before LLM resolution

Status: Open.

#426 In microbiomedata/external-metadata-awareness;

· turbomam opened on May 19, 2026