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National Microbiome Data Collaborative

National Microbiome Data Collaborative

67 followers
https://microbiomedata.org/
support@microbiomedata.org

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nmdc-schema nmdc-schema Public

National Microbiome Data Collaborative (NMDC) unified data model

Python 47 10
docs docs Public

User-facing, web-based documentation about the NMDC

Dockerfile 3 5

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Showing 10 of 85 repositories

submission-schema Public
The NMDC submission schema

microbiomedata/submission-schema’s past year of commit activity

Python 1 MIT 4 30 6 Updated Jun 8, 2026
external-metadata-awareness Public
MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

microbiomedata/external-metadata-awareness’s past year of commit activity

Jupyter Notebook 2 1 91 10 Updated Jun 8, 2026
nmdc-mass-spec-automation Public

microbiomedata/nmdc-mass-spec-automation’s past year of commit activity

Python 1 1 3 1 Updated Jun 8, 2026
docs Public
User-facing, web-based documentation about the NMDC

microbiomedata/docs’s past year of commit activity

Dockerfile 3 5 32 2 Updated Jun 8, 2026
nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema’s past year of commit activity

Python 47 CC0-1.0 10 431 (3 issues need help) 5 Updated Jun 8, 2026
nmdc-ingest-agent Public
AI-agent-assisted workflows for translating external metadata sources into NMDC-schema-compliant JSON

microbiomedata/nmdc-ingest-agent’s past year of commit activity

Python 3 0 21 3 Updated Jun 8, 2026
nmdc-ai-eval Public
Framework and data for performing evaluations for AI-powered NMDC tools.

microbiomedata/nmdc-ai-eval’s past year of commit activity

Python 2 0 34 2 Updated Jun 8, 2026
nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server’s past year of commit activity

Python 12 1 124 10 Updated Jun 5, 2026
ontology-loader Public
Suite of tools to configure and load an ontology from the OboFoundary into the data object for OntologyClass as specified by NMDC schema

microbiomedata/ontology-loader’s past year of commit activity

Python 0 1 17 1 Updated Jun 5, 2026
nmdc-runtime Public
Runtime system for NMDC data management and orchestration

microbiomedata/nmdc-runtime’s past year of commit activity

Python 7 7 140 (3 issues need help) 10 Updated Jun 5, 2026

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