2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
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Dec 19, 2023 - Python
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traction-force-microscopy
Here are 11 public repositories matching this topic...
3D Traction Force Microscopy with Python. Calculate cell-generated forces in collagen or other (nonlinear) biopolymer networks.
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Jul 2, 2026 - Python
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
fibers image-processing tfm orientation ecm microscopy imaging collagen cell-mechanics fibrosis traction-force-microscopy contractility mechanobiology
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Jan 17, 2025 - Python
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
finite-elements biophysics particle-image-velocimetry collagen traction-force-microscopy material-simulation multicellular-aggregates spheroid
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Apr 15, 2025 - Python
Easy-to-use traction force microscopy (TFM) software
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Dec 1, 2019 - MATLAB
u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.
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May 29, 2026 - MATLAB
Repository for single-layer 3D TFM for measuring cellular displacements and tractions with epifluorescence microscopy
matlab tfm microscopy fenics fluorescence-microscopy-imaging traction traction-force-microscopy neutrophil epifluorescence
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Nov 17, 2023 - MATLAB
Bayesian Traction Force Microscopy
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Apr 28, 2024 - Jupyter Notebook
Heterogeneous hydrogel modulus estimation for 3D traction force microscopy
scientific-computing microscopy inverse-problems 3d heterogeneous finite-element-methods cell-biology traction-force-microscopy extracellular-matrix hydrogel
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Jun 1, 2026 - Jupyter Notebook
Scripts and code created in Superfine/Bear lab
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May 6, 2020 - MATLAB
A Python pipeline for computing and visualising cell traction forces from fluorescence microscopy time-series images. It corrects for stage drift, computes substrate displacement via PIV (Particle Image Velocimetry), and inverts those displacements to traction stress via FTTC (Fourier Transfor
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Jun 18, 2026 - Python
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