Drug Resistance Prediction with Reference Graphs
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Oct 23, 2025 - Rust
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drug-resistance-prediction
Here are 13 public repositories matching this topic...
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
bioinformatics nanopore genomics variant-calling mycobacterium-tuberculosis drug-resistance-prediction
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Jun 5, 2026 - Python
My PhD thesis
bioinformatics phd-thesis tuberculosis bacterial-genomes nanopore-sequencing basecalling drug-resistance-prediction genome-graphs transmission-clustering
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Feb 14, 2022 - Jupyter Notebook
The implementation of Long-term Recurrent Convolutional Network (LRCN), wide-n-deep NN, LSTM, SVM, LR, RF for drug resistance prediction.
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Sep 27, 2021 - Python
Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations
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Feb 23, 2024 - Python
Explainable AI system for HIV drug resistance prediction using ensemble machine learning and SHAP-based genomic interpretability. HIVゲノム配列から薬剤耐性を予測し、SHAP解析による説明可能AIを実現する次世代バイオインフォマティクスシステム。
docker bioinformatics genomics computational-biology bioinformatics-pipeline hiv bioinformatics-analysis research-software-engineering explainable-ai fastapi streamlit healthcare-ai drug-resistance-prediction dry-lab
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Mar 3, 2026 - Python
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Nov 28, 2020 - Jupyter Notebook
The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.
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Sep 27, 2021
WGS-based drug resistance profiling and lineage classification of 15 Mycobacterium tuberculosis isolates from South Africa using TB-Profiler and Python.
python bioinformatics genomics wgs tuberculosis south-africa drug-resistance tuberculosis-classification drug-resistance-prediction tuberculosis-genomics
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May 10, 2026 - HTML
Analysis of gene expression, chromatin accessibility, and resistance phenotypes in melanoma cell lines treated with targeted therapies.
rna-seq gene-expression chip-seq atac-seq drug-resistance melanoma chromatin-accessibiity drug-resistance-prediction
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Jul 30, 2025
Multi-class classification of drug resistance in MTB clinical isolates
machine-learning svm prediction vcf diagnostics shell-script caret variant-calling samtools bwa-mem r-programming whole-genome-sequencing trimgalore multi-class-classification freebayes mycobacterium-tuberculosis drug-resistance-prediction
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Jan 30, 2024 - Shell
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
bioinformatics nanopore genomics slides variant-calling tuberculosis drug-resistance-prediction transmission-clustering
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Feb 24, 2022 - JavaScript
Multi-class classification of drug resistance in MTB clinical isolates
machine-learning r vcf shell-script caret variant-calling samtools bwa-mem whole-genome-sequencing multiclass-classification trimgalore multilayer-perceptron freebayes explainable-ai shap mycobacterium-tuberculosis dalex drug-resistance-prediction
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May 21, 2024 - Shell
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