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@Kitaolab Kitao Laboratory at School of Life Science and Technology, Tokyo Institute of Technology

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    8 repositories

    • GPR84

      Public
      0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • PaCS-Toolkit

      Public
      PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
      simulationhpcmolecular-dynamics
      simulationhpcmolecular-dynamicsproteinnamdgromacsmarkov-state-modelamberimstsubame
      Python
      •
      GNU General Public License v3.0
      •8•28•3•1•Updated Dec 14, 2025Dec 14, 2025

    • nadPaCS

      Public
      We release a friendly version for method developers to employ the Parallel Cascade Selection Molecular Dynamics simulations to perform xPaCS-MD with AMBER, GRO…
      0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • Sir2-p53

      Public
      Data of Sir2-p53 project
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 6, 2025Sep 6, 2025

    • FUS-ZnF

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

    • PaCS-Toolkit-example

      Public
      Example of input files for PaCS-Toolkit
      Shell
      •0•2•0•0•Updated Feb 13, 2025Feb 13, 2025

    • PaCS-MD-serial

      Public
      Python
      •3•3•0•0•Updated Dec 2, 2021Dec 2, 2021

    • PaCS-MD-HPC

      Public
      0•1•0•0•Updated Mar 7, 2020Mar 7, 2020
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