Search results

Sequencing strategy different between sample to infer CNVs vs Reference

Status: Open.

#252 In kharchenkolab/numbat;

· PauloRVMendonca opened on Jun 14, 2026

Dataset inquiry

Status: Open.

#249 In kharchenkolab/numbat;

· macelik opened on Apr 1, 2026

rtracklayer missing from singularity image

Status: Open.

#248 In kharchenkolab/numbat;

· lisannemout opened on Jan 29, 2026

Numbat-multi with 10x Multiome

Status: Open.

#245 In kharchenkolab/numbat;

· LucileBZH opened on Dec 12, 2025

Numbat assigns clone coloring in Panel.png not uniquely

Status: Open.

#241 In kharchenkolab/numbat;

· Mashuaiii opened on Oct 21, 2025

Error: object 'barcodes' not found in bulk mode

Status: Open.

#238 In kharchenkolab/numbat;

· ctho1 opened on Sep 14, 2025

Error in h(simpleError(msg, call)), consider using another log_formatter or skip_formatter on strings with curly braces?

Status: Open.

#233 In kharchenkolab/numbat;

· Gonnamu opened on Jul 1, 2025

Allele specific copy numbers for 'amp' and calculation of cnv_state_post

Status: Open.

#228 In kharchenkolab/numbat;

· kzb193 opened on May 27, 2025

Output file with separate nMajor and nMinor columns instead of cnv_state

Status: Open.

#226 In kharchenkolab/numbat;

· ecibola opened on May 12, 2025

Expression reference dataset giving high noise and tumor proportion

Status: Open.

#224 In kharchenkolab/numbat;

· katiedaco-diamondage opened on May 2, 2025

how to create the phasing reference panel - No X-chromosome currently

Status: Open.

#222 In kharchenkolab/numbat;

· ejscience opened on Apr 9, 2025

Questions About Running Numbat on Two Samples

Status: Open.

#221 In kharchenkolab/numbat;

· EmanueleCalvi opened on Mar 20, 2025