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0 depth reported across many genes in the pandora consensus

bug

Status: Open.

#357 In iqbal-lab-org/pandora;

· Danderson123 opened on Sep 17, 2024

Request for new release

Status: Open.

#356 In iqbal-lab-org/pandora;

· Danderson123 opened on Aug 23, 2024

Remove kmer_covgs.txt and kmer_probs.txt from pandora map/compare output

Status: Open.

#350 In iqbal-lab-org/pandora;

· leoisl opened on Nov 10, 2023

Downgrade log level from warning to info for "[warning] Could not find reference sequence for <gene> in the PRG so using the consensus path"

Status: Open.

#349 In iqbal-lab-org/pandora;

· leoisl opened on Nov 8, 2023

Add seed parameter for the random subcommand

Status: Open.

#341 In iqbal-lab-org/pandora;

· leoisl opened on Jul 19, 2023

Remove --max-covg param

Status: Open.

#340 In iqbal-lab-org/pandora;

· leoisl opened on Jul 19, 2023

Refactor common default CLI argument values

Status: Open.

#336 In iqbal-lab-org/pandora;

· leoisl opened on Jul 17, 2023

Investigate making pandora to compile on Mac

Status: Open.

#334 In iqbal-lab-org/pandora;

· leoisl opened on Jul 4, 2023

Incorrect mapping of a read to an incorrect gene as the true gene has no minimizer hits (with minimal example)

Status: Open.

#333 In iqbal-lab-org/pandora;

· Danderson123 opened on Jun 29, 2023

Incorrect annotation of one gene as another due to tight clustering of minimizer hits (with minimal example)

Status: Open.

#332 In iqbal-lab-org/pandora;

· Danderson123 opened on Jun 29, 2023

Issue while choosing the reference path for genotyping

Status: Open.

#329 In iqbal-lab-org/pandora;

· AmayAgrawal opened on May 26, 2023

Improving cluster size threshold choice

Status: Open.

#328 In iqbal-lab-org/pandora;

· leoisl opened on Feb 23, 2023