Update Genome annotation with Braker3#6979
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tflowers15 wants to merge 3 commits into
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thanks! ping @rlibouba |
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I have made some minor updates to the Genome annotation with Braker3 tutorial to correct mismatches between the names of the imported datasets and the input dataset names used in the tool setup steps.
Imported datasets from Zenodo:
https://zenodo.org/records/14770765/files/genome.fastahttps://zenodo.org/records/14770765/files/RNASeq.bamhttps://zenodo.org/records/14770765/files/protein_sequences.fastaTool input dataset names -> Corresponding imported file from Zenodo
genome_masked.fasta->genome.fastaSwissProt_subset.fasta->protein_sequences.fastaRemoved instructions for importing datasets from Data Library as the listed Data Library on the
usegalaxy.*servers that should contain the datasets for this tutorial does not appear to exist:GTN - Material->genome-annotation->Genome annotation with Braker3.Corrected the tool setup for
GFFreadto select the protein fasta output dataset (current instructions are to output the exon fasta dataset), which is used as an input for the followingBUSCOandOMArksteps (specificed input is GFFreadpep.fa).protein fasta file with the translation of CDS for each record (-y)