Elkins Lab
- 1 follower
- United States of America
- https://github.com/elkins-lab
- george.f.elkins@gmail.com
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synth-cryo-em
synth-cryo-em PublicGenerate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
Python 2
Repositories
- synth-xtal Public
Lightweight Crystallography profile simulation from protein coordinates, with Jupyter Notebook tutorials
elkins-lab/synth-xtal’s past year of commit activity - synth-afm Public
Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.
elkins-lab/synth-afm’s past year of commit activity - diff-ensemble Public
Differentiable VAE framework for predicting protein structural ensembles (IDPs) consistent with SAXS and NMR data. Built on JAX/Flax.
elkins-lab/diff-ensemble’s past year of commit activity - synth-dynamics Public
Fast Langevin dynamics engine using the Anisotropic Network Model (ANM) for rapid protein conformational ensemble generation.
elkins-lab/synth-dynamics’s past year of commit activity - resonance-flow Public
JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.
elkins-lab/resonance-flow’s past year of commit activity - diff-biophys Public
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
elkins-lab/diff-biophys’s past year of commit activity
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