v0.1.0

What's Changed

📚 Documentation

• Update README.md with PyPI installation instructions by @turbomam in #187

🔄 Other Changes

• Setup complete Python UV repo with comprehensive tooling by @turbomam in #4
• enrichments proposed by @turbomam in #15
• 14 steal gold and nmdc biosample adapter and normalization form crawl first by @turbomam in #21
• valid synthetic inputs by @turbomam in #23
• Implement MongoDB-based HTTP caching system with coordinate canonicalization by @turbomam in #34
• Add comprehensive centralized logging framework with mainstream approach by @turbomam in #41
• 24 define an output schema by @turbomam in #55
• 16 makefile targets should never use python m by @turbomam in #56
• Move all imports to top of files and remove conditional imports by @turbomam in #57
• Add comprehensive reverse geocoding with OSM and Google providers by @turbomam in #62
• Add deptry dependency check to GitHub Actions CI workflow by @turbomam in #63
• Refactor Makefile for better target integration and style compliance by @turbomam in #64
• Restore data/outputs/schema files by @turbomam in #65
• Remove placeholder/mock enrichment functionality by @turbomam in #66
• 20 minimize workarounds in pyprojecttoml type ignores in code etc by @turbomam in #69
• increasing code coverage by @turbomam in #71
• Remove async/await code for simplicity by @turbomam in #74
• Replace relative imports with absolute package imports by @turbomam in #75
• Disable uv cache to fix persistent GitHub cache errors by @turbomam in #77
• 72 create api provider enumerations for the click cli and show in help by @turbomam in #79
• 50 ultimate integration test retrieve biosample metadata from gold and nmdc normalize put though lookups and quantify successcoverage by @turbomam in #81
• Switch HTTP cache from MongoDB to SQLite as default backend by @turbomam in #84
• 89 restore and protect the data outputs schema files by @turbomam in #90
• Fix cache parameter conflict causing API failures and metrics degradation by @turbomam in #93
• Complete weather enrichment system with multi-provider integration by @turbomam in #97
• Apply automatic formatting to weather evaluation code by @turbomam in #98
• Implement comprehensive marine enrichment system following weather patterns by @turbomam in #100
• 83 loose ends for repo cleanup by @turbomam in #101
• Implement comprehensive soil enrichment system with USDA and SoilGrids providers by @turbomam in #103
• land use etc by @turbomam in #104
• forward geocoding address -> lat lon by @turbomam in #109
• Add comprehensive development guidelines and standardize project architecture by @turbomam in #118
• updated CLUADE.md by reviewing issues by @turbomam in #119
• Complete workspace to enrichment-lifecycle migration and test organization by @turbomam in #120
• Complete workspace lifecycle migration and cleanup by @turbomam in #156
• Add hatch-vcs for git-based versioning by @turbomam in #158
• include config files in package by @turbomam in #157
• Populate init.py with public API exports by @turbomam in #159
• Fix import-time dependency detection by @turbomam in #160
• Restructure dependencies: core vs optional groups (#142) by @turbomam in #161
• Rewrite README with Accurate API Documentation by @turbomam in #162
• Configure GitHub Repository Metadata by @turbomam in #172
• Add Comprehensive Contributing Guide by @turbomam in #163
• Configure GitHub Auto-Release Notes by @turbomam in #173
• Add Python 3.13 to CI test matrix by @turbomam in #174
• Complete PyPI metadata for package publication by @turbomam in #175
• Add TestPyPI validation workflow with trusted publishing by @turbomam in #176
• Move demo files to examples/ directory to reduce package bloat by @turbomam in #177
• Fix #178: Make matplotlib/seaborn truly optional dependencies by @turbomam in #179
• Add biosample-enricher-metrics CLI entry point by @turbomam in #180

New Contributors

• @turbomam made their first contribution in #4

Full Changelog: https://github.com/contextualizer-ai/biosample-enricher/commits/v0.1.0