1.3.2

[1.3.2] - 20250829

Housekeeping

• Cleaned up variable syntax for clarity and consistency
• Ensure no memory issues on laptops for pixi run test (hash based deduplication memory can spike on FASTP)
• Aligned index kmer sizes in params.
• Converted slurm example script to a pipeline agnostic template

Vg command updates

• For complex graphs, vg index may cause memory issues. Users can switch on --noNestedDistance to add this option to the initial vg indexing commands and produce a limited version of the distance index. Note this currently wouldn't help for the pangenome-map module, in which case we'd consider upgrading that module to a process_high label

• vg filter - removed unused ext.args