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AttributeError when running on low-coverage sample

Status: Open.

#148 In MicrobialDarkMatter/nanomotif;

· MarkusHaak opened on May 22, 2026

How to output detailed information about the methylation sites occurring in each bin?

Status: Open.

#147 In MicrobialDarkMatter/nanomotif;

· luda99 opened on Jan 26, 2026

MTase-linker install fails: motif_assignment KeyError 'n_mod' (bin-motifs.tsv uses n_mod_bin/n_nomod_bin)

Status: Open.

#146 In MicrobialDarkMatter/nanomotif;

· JinwnK opened on Dec 22, 2025

nanomofit MT-linker install currently broken :: manual fix available

Status: Open.

#145 In MicrobialDarkMatter/nanomotif;

· EricDeveaud opened on Dec 19, 2025

Detect_contamination Error:Error running epymetheus[v1.0.2]

Status: Open.

#138 In MicrobialDarkMatter/nanomotif;

· leexiao0930-svg opened on Oct 10, 2025

Clarification on motifs-scored-read-methylation.tsv

Status: Open.

#133 In MicrobialDarkMatter/nanomotif;

· harikaurel opened on Sep 26, 2025

Error in motif-discovery when spaces in fasta headers

bugSomething isn't workingSomething isn't working

Status: Open.

#118 In MicrobialDarkMatter/nanomotif;

· brambloemen opened on Jun 12, 2025

Doco / output format change for multiply-methylated motifs

Status: Open.

#116 In MicrobialDarkMatter/nanomotif;

· wwood opened on Jun 6, 2025

support --bin-fasta-files input

enhancementNew feature or requestNew feature or request

Status: Open.

#115 In MicrobialDarkMatter/nanomotif;

· wwood opened on Jun 6, 2025

tabix

enhancementNew feature or requestNew feature or request

Status: Open.

#112 In MicrobialDarkMatter/nanomotif;

· wwood opened on Jun 6, 2025

bin_contig and sequence descriptions

Status: Open.

#111 In MicrobialDarkMatter/nanomotif;

· wwood opened on Jun 6, 2025