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[pre-commit.ci] pre-commit autoupdate #474

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[pre-commit.ci] pre-commit autoupdate

[pre-commit.ci] pre-commit autoupdate #474

Workflow file for this run

.github/workflows/benchmark.yaml at aa7808e
name: cml
on:
push:
jobs:
benchmark:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Install uv and set the python version
uses: astral-sh/setup-uv@v5
- uses: actions/setup-node@v1
with:
node-version: '16'
- uses: iterative/setup-cml@v1
- name: Install package
run: |
uv sync --all-extras --dev
- name: Run pytest
run: |
uv run python --version
uv run pytest --benchmark-histogram benchmark -m benchmark
uv run python benchmarks/read.py
- name: Create report
env:
REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
echo '# Benchmark' >> report.md
echo '## Write: Varying number of images' >> report.md
echo '![](./benchmark-write-count.svg "Write benchmark, varying count")' >> report.md
echo '## Write: Varying number of atoms' >> report.md
echo '![](./benchmark-write-size.svg "Write benchmark, varying size")' >> report.md
echo '## Read: Varying number of images' >> report.md
echo '![](./benchmark-read-count.svg "Read benchmark, varying count")' >> report.md
echo '## Read: Varying number of atoms' >> report.md
echo '![](./benchmark-read-size.svg "Read benchmark, varying size")' >> report.md
echo '## Read: Comparison with other packages' >> report.md
echo '![](./benchmark_h5md.png "Read benchmark, comparison with other packages")' >> report.md
echo '![](./benchmark_h5md-uncompressed.png "Read benchmark, comparison with other packages")' >> report.md
echo '![](./benchmark_xyz.png "Read benchmark, comparison with other packages")' >> report.md
echo '![](./benchmark_pdb.png "Read benchmark, comparison with other packages")' >> report.md
echo '![](./benchmark_xtc.png "Read benchmark, comparison with other packages")' >> report.md
cml comment update report.md