singlet/NAMESPACE at main · zdebruine/singlet · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(AnnotateNMF,DimReduc)
S3method(AnnotateNMF,Seurat)
S3method(AnnotateNMF,nmf)
S3method(AnnotationPlot,DimReduc)
S3method(AnnotationPlot,Seurat)
S3method(AnnotationPlot,data.frame)
S3method(AnnotationPlot,list)
S3method(AnnotationPlot,nmf)
S3method(FindLocalNeighbors,Seurat)
S3method(MetadataPlot,Seurat)
S3method(PreprocessData,Assay)
S3method(PreprocessData,Seurat)
S3method(PreprocessData,dgCMatrix)
S3method(ProjectData,Seurat)
S3method(ProjectData,SingleCellExperiment)
S3method(RankPlot,Seurat)
S3method(RescaleSpatial,Seurat)
S3method(RunGCNMF,Seurat)
S3method(RunLNMF,Seurat)
S3method(RunNMF,Seurat)
S3method(RunNMF,SingleCellExperiment)
S3method(plot,cross_validate_nmf_data)
S3method(plot,nmf_metadata_summary)
export(AnnotateNMF)
export(AnnotationPlot)
export(FindLocalNeighbors)
export(GSEAHeatmap)
export(GetBestRank)
export(GetSharedFactors)
export(GetUniqueFactors)
export(MetadataHeatmap)
export(MetadataPlot)
export(MetadataSummary)
export(PreprocessData)
export(ProjectData)
export(RankPlot)
export(RasterizeRowwise)
export(RescaleSpatial)
export(RunGCNMF)
export(RunGSEA)
export(RunLNMF)
export(RunNMF)
export(ard_nmf)
export(cellxgene_pipeline)
export(checkColumns)
export(checkDesigns)
export(cross_validate_nmf)
export(getDesigns)
export(getModelFit)
export(getModelMatrix)
export(getModelResults)
export(get_pbmc3k_data)
export(normit)
export(plotFactorWeights)
export(project_model)
export(run_nmf)
export(write_IVCSC)
exportMethods("$")
exportMethods("$<-")
exportMethods("[")
exportMethods(coerce)
import(Matrix)
import(RcppML)
import(Seurat)
import(dplyr)
import(fgsea)
import(ggplot2)
import(limma)
import(msigdbr)
importClassesFrom(RcppML,nmf)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(reshape2,acast)
importFrom(reshape2,melt)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,reshape)
importFrom(stats,runif)
importFrom(utils,data)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(singlet, .registration = TRUE)