feat: file filter doesn't exclude tracked files though .gitignore rules

Author: CatalinSnyk

cliv2-private/go.mod

@@ -220,7 +220,7 @@ require (
 	github.com/snyk/container-cli v0.0.0-20260213211631-cd2b2cf8f3ea // indirect
 	github.com/snyk/dep-graph/go v0.0.0-20260127160647-c836da762c62 // indirect
 	github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663 // indirect
-	github.com/snyk/go-application-framework v0.11.0 // indirect
+	github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36 // indirect
 	github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65 // indirect
 	github.com/snyk/policy-engine v1.1.4 // indirect
 	github.com/snyk/snyk-iac-capture v0.6.5 // indirect

cliv2-private/go.sum

@@ -593,8 +593,8 @@ github.com/snyk/dep-graph/go v0.0.0-20260127160647-c836da762c62 h1:kgZNQ5ztI4+n3
 github.com/snyk/dep-graph/go v0.0.0-20260127160647-c836da762c62/go.mod h1:hTr91da/4ze2nk9q6ZW1BmfM2Z8rLUZSEZ3kK+6WGpc=
 github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663 h1:j2ZPhi78wKIHTiL9EFTNVXMIbsk56FVF2d5Sy1ZwSYk=
 github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663/go.mod h1:Ytttq7Pw4vOCu9NtRQaOeDU2dhBYUyNBe6kX4+nIIQ4=
-github.com/snyk/go-application-framework v0.11.0 h1:lOZhYO8JmzMoZKQbCb/jHMnrB/N3TvX8Z6oE/L9OQ7o=
-github.com/snyk/go-application-framework v0.11.0/go.mod h1:9GV/CTAhM8PT9MbxwYt/Za7tKDtw/Wuq6SyCu1XFzvk=
+github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36 h1:dTNtgFObLaNrVQ3UYkrV5zOO2av6rA3WZVTtNzZZt4g=
+github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36/go.mod h1:9GV/CTAhM8PT9MbxwYt/Za7tKDtw/Wuq6SyCu1XFzvk=
 github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65 h1:CEQuYv0Go6MEyRCD3YjLYM2u3Oxkx8GpCpFBd4rUTUk=
 github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65/go.mod h1:88KbbvGYlmLgee4OcQ19yr0bNpXpOr2kciOthaSzCAg=
 github.com/snyk/policy-engine v1.1.4 h1:0XpaMpl7ixSk4+dlpHYg2iKEBuv+5Ci+QIcbsmhktao=

cliv2/go.mod

@@ -22,7 +22,7 @@ require (
 	github.com/snyk/code-client-go v1.31.1
 	github.com/snyk/container-cli v0.0.0-20260213211631-cd2b2cf8f3ea
 	github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663
-	github.com/snyk/go-application-framework v0.11.0
+	github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36
 	github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65
 	github.com/snyk/snyk-iac-capture v0.6.5
 	github.com/snyk/snyk-ls v0.0.0-20260804092303-865b318b1c8f

cliv2/go.sum

@@ -547,8 +547,8 @@ github.com/snyk/dep-graph/go v0.0.0-20260127160647-c836da762c62 h1:kgZNQ5ztI4+n3
 github.com/snyk/dep-graph/go v0.0.0-20260127160647-c836da762c62/go.mod h1:hTr91da/4ze2nk9q6ZW1BmfM2Z8rLUZSEZ3kK+6WGpc=
 github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663 h1:j2ZPhi78wKIHTiL9EFTNVXMIbsk56FVF2d5Sy1ZwSYk=
 github.com/snyk/error-catalog-golang-public v0.0.0-20260505112649-a5103d411663/go.mod h1:Ytttq7Pw4vOCu9NtRQaOeDU2dhBYUyNBe6kX4+nIIQ4=
-github.com/snyk/go-application-framework v0.11.0 h1:lOZhYO8JmzMoZKQbCb/jHMnrB/N3TvX8Z6oE/L9OQ7o=
-github.com/snyk/go-application-framework v0.11.0/go.mod h1:9GV/CTAhM8PT9MbxwYt/Za7tKDtw/Wuq6SyCu1XFzvk=
+github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36 h1:dTNtgFObLaNrVQ3UYkrV5zOO2av6rA3WZVTtNzZZt4g=
+github.com/snyk/go-application-framework v0.11.1-0.20260805074715-9d2ac0263a36/go.mod h1:9GV/CTAhM8PT9MbxwYt/Za7tKDtw/Wuq6SyCu1XFzvk=
 github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65 h1:CEQuYv0Go6MEyRCD3YjLYM2u3Oxkx8GpCpFBd4rUTUk=
 github.com/snyk/go-httpauth v0.0.0-20240307114523-1f5ea3f55c65/go.mod h1:88KbbvGYlmLgee4OcQ19yr0bNpXpOr2kciOthaSzCAg=
 github.com/snyk/policy-engine v1.1.4 h1:0XpaMpl7ixSk4+dlpHYg2iKEBuv+5Ci+QIcbsmhktao=