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Copy pathRanges.h
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78 lines (61 loc) · 2.29 KB
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#pragma once
#include <stdint.h>
#include "numpy_assist.h"
using namespace std;
namespace bp = boost::python;
// Template class for working with intervals -- pairs of objects of
// the same (well-ordered) type, with operations defined that support
// intersection, union, and subtraction.
template <typename T>
class Ranges {
public:
T count;
T reference;
vector<pair<T,T>> segments;
// Construction
Ranges() : count{0}, reference(0) {}
Ranges(T count) : count{count}, reference(0) {}
Ranges(T count, T reference) : count{count}, reference(reference) {}
static Ranges<T> from_array(const bp::object &src, const bp::object &count);
// Basic ops
Ranges<T>& merge(const Ranges<T> &src);
Ranges<T>& intersect(const Ranges<T> &src);
Ranges<T>& add_interval(const T start, const T end);
Ranges<T>& _add_interval_numpysafe(const bp::object start,
const bp::object end);
Ranges<T>& append_interval_no_check(const T start, const T end);
Ranges<T>& buffer(const T buff);
Ranges<T>& close_gaps(const T gap);
Ranges<T> buffered(const T buff) const;
Ranges<T> complement() const;
Ranges<T> zeros_like() const;
Ranges<T> ones_like() const;
void cleanup();
bp::object ranges() const;
Ranges<T> getitem(bp::object indices);
bp::object shape();
void safe_set_count(T count_);
// Operators.
Ranges<T> operator~() const;
Ranges<T> operator-() const;
void operator+=(const Ranges<T> &src);
void operator*=(const Ranges<T> &src);
Ranges<T> operator+(const Ranges<T> &src) const;
Ranges<T> operator*(const Ranges<T> &src) const;
// Special conversions.
static bp::object from_bitmask(const bp::object &src, int n_bits);
static bp::object bitmask(const bp::list &ivlist, int n_bits);
static bp::object from_mask(const bp::object &src);
bp::object mask();
string Description() const;
};
// Support for working with RangesMatrix, which is basically just a list of Ranges
template <typename T>
vector<Ranges<T>> extract_ranges(const bp::object & ival_list) {
const int N = bp::len(ival_list);
vector<Ranges<T>> v(N);
for (int i=0; i<N ; i++)
v[i] = bp::extract<Ranges<T>>(ival_list[i])();
return v;
}
typedef Ranges<int32_t> RangesInt32;