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21 repositories

bwa-mem3
Public
Accelerated short-read alignment, derived from bwa-mem2 — drop-in replacement with correctness fixes, performance improvements, single-binary methylation, and s…
bioinformatics genomics methylation
bioinformatics genomics methylation alignment bwa short-read bwa-mem2
C++
•
Other
•134•21•17•4•Updated Aug 15, 2026Aug 15, 2026
minibwa-bindings
Public
Rust and Python bindings for minibwa — Heng Li's lightweight bwa
python rust bioinformatics
python rust bioinformatics genomics ffi ngs alignment bwa sequence-alignment pyo3
Rust
•
MIT License
•1•4•1•3•Updated Aug 15, 2026Aug 15, 2026
bwa-mem3-rs
Public
Rust FFI crate for bwa-mem3 with packed-BAM output and caller-owned parallelism
rust bioinformatics genomics
rust bioinformatics genomics ffi ngs alignment bam bwa sequence-alignment bwa-mem2
Rust
•
MIT License
•0•4•2•1•Updated Aug 15, 2026Aug 15, 2026
mako
Public
Fast SAM/BAM sorter.
rust sorting bioinformatics
rust sorting bioinformatics genomics ngs sam bam samtools
Rust
•
MIT License
•0•6•1•1•Updated Aug 14, 2026Aug 14, 2026
fgmetric
Public
Pydantic-backed validation of delimited text files.
python tsv csv
python tsv csv validation data-validation pydantic
Python
•
MIT License
•0•3•13•13•Updated Aug 14, 2026Aug 14, 2026
bwa-mem3-bench
Public
Benchmarking suite comparing bwa-mem3 against upstream bwa-mem2 v2.2.1
python benchmarking bioinformatics
python benchmarking bioinformatics genomics alignment bwa bwa-mem2
Python
•
MIT License
•0•0•3•0•Updated Aug 12, 2026Aug 12, 2026
unum
Public
Fulcrum-owned Rust HLA/KIR genotyper (strangler port of T1K)
Rust
•
MIT License
•0•3•1•3•Updated Aug 12, 2026Aug 12, 2026
redskull
Public
A conda recipe generator for Rust crates.
rust packaging conda
rust packaging conda crates cargo bioconda
Rust
•
MIT License
•0•3•1•3•Updated Aug 10, 2026Aug 10, 2026
spoars
Public
Faithful, memory-safe, SIMD-accelerated native-Rust reimplementation of the spoa partial order alignment library
Rust
•
MIT License
•0•8•1•3•Updated Aug 9, 2026Aug 9, 2026
rust-yara
Public
Safe Rust FFI bindings for the YARA read mapper and indexer (SeqAn2)
rust bioinformatics genomics
rust bioinformatics genomics ffi yara read-mapping seqan2
Rust
•
MIT License
•0•0•0•3•Updated Aug 4, 2026Aug 4, 2026
refget-rs
Public
GA4GH refget Sequences v2.0.0 and Sequence Collections v1.0.0 — server, client, and CLI tools in Rust
rust bioinformatics genomics
rust bioinformatics genomics ga4gh refget sequence-collections
Rust
•
MIT License
•0•1•0•3•Updated Aug 4, 2026Aug 4, 2026
tricord
Public
Run a command and report its process tree's CPU, memory, and I/O usage
rust cli benchmarking
rust cli benchmarking performance cpu memory profiling
Rust
•
MIT License
•0•21•1•3•Updated Aug 4, 2026Aug 4, 2026
nf-fgsv
Public
Small workflow to run fgsv and test new nextflow features.
workflow bioinformatics pipeline
workflow bioinformatics pipeline nextflow structural-variants fgsv
Nextflow
•
MIT License
•0•0•0•0•Updated Jul 30, 2026Jul 30, 2026
fg-sra
Public
High-performance SRA-to-SAM/BAM converter replacing NCBI sam-dump
rust bioinformatics ngs
rust bioinformatics ngs sam bam sra
Rust
•
MIT License
•0•5•1•3•Updated Jul 30, 2026Jul 30, 2026
snakesee
Public
A terminal UI for monitoring Snakemake workflows
python workflow bioinformatics
python workflow bioinformatics snakemake terminal monitor tui
Python
•
MIT License
•1•23•5•1•Updated Jul 20, 2026Jul 20, 2026
holodeck
Public
NGS read simulator
rust bioinformatics genomics
rust bioinformatics genomics simulation ngs sequencing fastq read-simulation
Rust
•
MIT License
•0•6•3•4•Updated Jul 19, 2026Jul 19, 2026
chum
Public
Evaluate the effectiveness of baits in a hybrid selection panel
rust bioinformatics genomics
rust bioinformatics genomics panel ngs baits hybrid-selection
Rust
•
MIT License
•0•4•0•1•Updated Jul 19, 2026Jul 19, 2026
prmi
Public
The recursive model index, a learned index structure
Rust
•
MIT License
•43•0•2•0•Updated Jul 7, 2026Jul 7, 2026
primer3-rs
Public
Safe, idiomatic Rust bindings to the primer3 C library for PCR primer design and oligonucleotide thermodynamic calculations
rust bioinformatics ffi
rust bioinformatics ffi bindings pcr primer-design oligonucleotide primer3
Rust
•
Other
•0•3•0•3•Updated Jun 22, 2026Jun 22, 2026
cargo-ghdoc
Public
View Rustdocs for PRs
github rust documentation
github rust documentation cargo rustdoc cargo-plugin
Rust
•
MIT License
•1•1•0•0•Updated Apr 30, 2026Apr 30, 2026
.github
Public
fg-labs organization profile
MIT License
•0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

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Fulcrum Genomics Labs

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21 repositories

bwa-mem3

minibwa-bindings

bwa-mem3-rs

mako

fgmetric

bwa-mem3-bench

unum

redskull

spoars

rust-yara

refget-rs

tricord

nf-fgsv

fg-sra

snakesee

holodeck

chum

prmi

primer3-rs

cargo-ghdoc

.github

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21 repositories