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    305 repositories

    • long-read-sequencing-workshop-2026

      Public
      Materials for the 2026 delivery of the Australian BioCommons long read sequencing analysis workshop.
      1•0•0•0•Updated Jul 31, 2026Jul 31, 2026

    • scrnavigator-nf

      Public
      A Nextflow pipeline for processing single cell RNA sequencing data and performing differential expression and functional enrichment analyses.
      GNU General Public License v3.0
      •0•0•2•3•Updated Jul 31, 2026Jul 31, 2026

    • BioShell-User-Guide

      Public
      SCSS
      •
      MIT License
      •1•1•1•0•Updated Jul 31, 2026Jul 31, 2026

    • Human-Rights-News

      Public
      Public version of the Observable notebook for Human Rights News
      Python
      •0•0•0•0•Updated Jul 31, 2026Jul 31, 2026

    • omics-study-designs-and-data-interpretation

      Public
      Foundations of Omics Study Design, Bias, and Data Interpretation ​
      HTML
      •
      Other
      •0•0•0•0•Updated Jul 31, 2026Jul 31, 2026

    • shelley

      Public
      Beautiful shelley 🐢
      Python
      •
      GNU General Public License v3.0
      •0•2•10•0•Updated Jul 30, 2026Jul 30, 2026

    • guts

      Public
      Actions and client to derive container guts! 🤓
      Python
      •
      Mozilla Public License 2.0
      •3•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • BioShell

      Public
      Shell
      •2•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • links

      Public
      Url shortener for Sydney Informatics Hub links
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • stats-resources

      Public
      SIH Statistics resources
      HTML
      •
      Other
      •4•7•1•0•Updated Jul 30, 2026Jul 30, 2026

    • doc-bot

      Public
      0•1•0•1•Updated Jul 28, 2026Jul 28, 2026

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •371•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      HTML
      •
      MIT License
      •74•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • Germline-StructuralV-nf

      Public
      Germline structural variant calling pipeline for short read WGS datasets
      workflowbioinformaticspipeline
      workflowbioinformaticspipelinegenomicsnextflowngsmantabamsurvivorstructural-variants
      Nextflow
      •
      GNU General Public License v3.0
      •5•9•7•1•Updated Jul 24, 2026Jul 24, 2026

    • knowledgebase

      Public
      Content for linking to USYD knowledgebase
      0•0•0•0•Updated Jul 22, 2026Jul 22, 2026

    • usyd-gadi-onboarding-guide

      Public
      User guide for onboarding USyd users to NCI Gadi
      CSS
      •
      MIT License
      •1•4•1•0•Updated Jul 22, 2026Jul 22, 2026

    • nf4ls-materials

      Public
      NF4LS trainer materials
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•4•0•Updated Jul 22, 2026Jul 22, 2026

    • nf4hpc-materials

      Public
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•0•15•0•Updated Jul 22, 2026Jul 22, 2026

    • omeka-s-import-tools

      Public
      Python toolkit for tidying CSVs for Omeka S import
      Python
      •0•0•1•1•Updated Jul 21, 2026Jul 21, 2026

    • omeka-s-docker

      Public
      Dockerisation for the Curated Collections distribution of Omeka S
      PHP
      •0•0•7•0•Updated Jul 21, 2026Jul 21, 2026

    • gpu-cluster-onboarding-guide

      Public
      CSS
      •
      MIT License
      •0•1•0•3•Updated Jul 20, 2026Jul 20, 2026

    • cvmfs_shpc_demo

      Public
      0•0•0•0•Updated Jul 14, 2026Jul 14, 2026

    • HPC_usage_reports

      Public
      Scripts to pull resource usage data from job logs for Artemis and Gadi into tab-delimited format and to report queue time from job history
      nextflowhpcartemis
      nextflowhpcartemisgadinf-corenci-gadiusyd-artemis
      Perl
      •0•3•2•1•Updated Jul 13, 2026Jul 13, 2026

    • scRNAseq_Workshop

      Public
      Single cell RNAseq workshop
      R
      •5•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • Parabricks-Genomics-nf

      Public
      Scalable Nextflow implementation of germline alignment and short variant calling with Parabricks for NCI Gadi HPC.
      Nextflow
      •
      GNU General Public License v3.0
      •3•8•7•1•Updated Jul 9, 2026Jul 9, 2026

    • ngc-omeka

      Public
      An enduring web publishing platform solution for Humanities, Arts and Social Sciences (HASS) and Indigenous research data collections.
      PHP
      •1•0•0•2•Updated Jul 8, 2026Jul 8, 2026

    • scrna-analysis

      Public
      A set of notebooks and scripts for analysing single cell RNA sequencing data.
      R
      •
      GNU General Public License v3.0
      •0•3•22•1•Updated Jul 6, 2026Jul 6, 2026

    • blockparty

      Public
      For the artists
      HTML
      •0•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • rocrate-tabular

      Public
      Python library for converting an RO-Crate to tabular representations
      HTML
      •4•3•38•0•Updated Jun 24, 2026Jun 24, 2026

    • OmekaS-MappingExtensions

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 24, 2026Jun 24, 2026
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