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    210 repositories

    • diverger-agents-template

      Public
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • aiod_utils

      Public
      Python
      •
      MIT License
      •0•1•0•9•Updated Aug 4, 2026Aug 4, 2026

    • introduction-to-image-analysis-fiji

      Public
      Introduction to image analysis and scripting with FIJI
      ImageJ Macro
      •
      Creative Commons Attribution Share Alike 4.0 International
      •10•0•0•0•Updated Aug 3, 2026Aug 3, 2026

    • CellSurvey

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2026Aug 2, 2026

    • aiod_napari

      Public
      Python
      •
      MIT License
      •1•6•4•6•Updated Jul 31, 2026Jul 31, 2026

    • Segment-Flow

      Public
      Nextflow pipeline for deep learning segmentation models
      Python
      •
      MIT License
      •3•8•0•9•Updated Jul 31, 2026Jul 31, 2026

    • Simple-3D-Nuclear-Intensity-Quantification

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • py-bioimage-qc

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 30, 2026Jul 30, 2026

    • pMANIC

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•11•0•Updated Jul 29, 2026Jul 29, 2026

    • multi-dimensional-imaging-and-analysis

      Public
      Jupyter Notebook
      •1•4•0•0•Updated Jul 28, 2026Jul 28, 2026

    • aiod_registry

      Public
      The core registry for all AI models available on AIoD
      Python
      •
      MIT License
      •1•3•1•2•Updated Jul 28, 2026Jul 28, 2026

    • aiod_docs

      Public
      Documentation for AI OnDemand (AIoD)
      0•1•6•0•Updated Jul 27, 2026Jul 27, 2026

    • OmeSliCC

      Public
      Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
      ome-zarr-converter
      ome-zarr-converter
      Python
      •
      Other
      •1•7•0•0•Updated Jul 24, 2026Jul 24, 2026

    • cell-classifier

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • Cg1-KO

      Public
      Code used for data analysis for the Cg1-KO project
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 22, 2026Jul 22, 2026

    • Object-Midline-Detection

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • brainsaw-data-processing

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 18, 2026Jul 18, 2026

    • bia-team

      Public
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jul 11, 2026Jul 11, 2026

    • biabot

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • spc-data-explorer

      Public
      Dashboard for exploring cell painting data from Cell Profiler & AI/ML models
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • CrosstalkPy

      Public
      Python
      •0•1•0•0•Updated Jul 2, 2026Jul 2, 2026

    • babs-template-rnaseq

      Public
      R
      •0•1•0•0•Updated Jul 1, 2026Jul 1, 2026

    • lyra

      Public archive
      Agentic primative repository
      lyra
      lyra
      Python
      •3•11•3•2•Updated Jul 1, 2026Jul 1, 2026

    • soc_dynamicIPList

      Public
      Multiple Python Scripts that Provide a web downloadable point for various lookup files
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • LARRY

      Public
      Nextflow pipeline to analyse LARRY tracing sequencing data.
      HTML
      •
      MIT License
      •0•3•0•0•Updated Jun 25, 2026Jun 25, 2026

    • spc-cosine-analysis

      Public
      Cell Painting phenotypic analysis pipeline for SPC machine learning embeddings - distance metrics, landmark identification, compound scoring, and hierarchical c…
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2026Jun 18, 2026

    • introduction-to-image-analysis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •10•9•0•0•Updated Jun 16, 2026Jun 16, 2026

    • ah3n2_analysis_public

      Public
      A/H3N2 serology data analysis
      R
      •0•0•0•0•Updated Jun 15, 2026Jun 15, 2026

    • Image-Analysis-Group

      Public
      We are the Image Analysis Group at the Francis Crick Institute.
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •2•4•5•0•Updated Jun 12, 2026Jun 12, 2026

    • napari-isbem

      Public
      Multimodal SBEM acquistion targeting
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2026Jun 11, 2026
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