Merge pull request #85 from YiJin-Xiong/methylongv2.1 #441
YiJin-XiongAnnotations
100 warnings
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (25.10.4 | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^dotnet-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^aspnetcore-.*'] failed to complete successfully. Proceeding...
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