DESCRIPTION

Package: domainCalling
Version: 3.5.2
Title: Tools for domain calling using csaw pipeline
Author: Chao-Jen Wong
Maintainer: Chao-Jen Wong <cwon2@fredhutch.org>
Depends:  R (>= 3.4), csaw, Rsamtools
Imports: BiocParallel, rtracklayer
Suggests: TxDb.Hsapiens.UCSC.hg19.ensGene
Description: Tools for domain calling built upon the csaw pipeline. Designed for CutAndRun-seq data with large, diffused binding domains (~20k). Tested and built under R3.4/Bioc3.5.
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
Collate: tools.R getDomainTagMatrix.R getSampleInformation.R makeFragCoverageTrack.R domainCalling.R calcDomainFPKM.R getAnnotaion.R zzz.R