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816 lines (709 loc) · 32.9 KB
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import copy
import json
import event_model
import numpy
import pytest
def test_documents():
dn = event_model.DocumentNames
for k in ('stop', 'start', 'descriptor',
'event', 'bulk_events', 'datum',
'resource', 'bulk_datum', 'event_page', 'datum_page'):
assert dn(k) == getattr(dn, k)
def test_len():
assert 10 == len(event_model.DocumentNames)
def test_schemas():
for k in event_model.DocumentNames:
assert k in event_model.SCHEMA_NAMES
assert event_model.schemas[k]
def test_schema_validators():
for name in event_model.schemas.keys():
assert name in event_model.schema_validators
assert len(event_model.schema_validators) == len(event_model.schemas)
def test_compose_run():
# Compose each kind of document type. These calls will trigger
# jsonschema.validate and ensure that the document-generation code composes
# valid documents.
bundle = event_model.compose_run()
start_doc, compose_descriptor, compose_resource, compose_stop = bundle
assert bundle.start_doc is start_doc
assert bundle.compose_descriptor is compose_descriptor
assert bundle.compose_resource is compose_resource
assert bundle.compose_stop is compose_stop
bundle = compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
descriptor_doc, compose_event, compose_event_page = bundle
assert bundle.descriptor_doc is descriptor_doc
assert bundle.compose_event is compose_event
assert bundle.compose_event_page is compose_event_page
bundle = compose_resource(
spec='TIFF', root='/tmp', resource_path='stack.tiff',
resource_kwargs={})
resource_doc, compose_datum, compose_datum_page = bundle
assert bundle.resource_doc is resource_doc
assert bundle.compose_datum is compose_datum
assert bundle.compose_datum_page is compose_datum_page
datum_doc = compose_datum(datum_kwargs={'slice': 5})
event_doc = compose_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False})
assert 'descriptor' in event_doc
assert event_doc['seq_num'] == 1
stop_doc = compose_stop()
assert 'primary' in stop_doc['num_events']
assert stop_doc['num_events']['primary'] == 1
def test_round_trip_pagination():
run_bundle = event_model.compose_run()
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
res_bundle = run_bundle.compose_resource(
spec='TIFF', root='/tmp', resource_path='stack.tiff',
resource_kwargs={})
datum_doc1 = res_bundle.compose_datum(datum_kwargs={'slice': 5})
datum_doc2 = res_bundle.compose_datum(datum_kwargs={'slice': 10})
datum_doc3 = res_bundle.compose_datum(datum_kwargs={'slice': 15})
event_doc1 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc1['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
event_doc2 = desc_bundle.compose_event(
data={'motor': 1, 'image': datum_doc2['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
event_doc3 = desc_bundle.compose_event(
data={'motor': 2, 'image': datum_doc3['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
# Round trip single event -> event_page -> event.
expected = event_doc1
actual, = event_model.unpack_event_page(
event_model.pack_event_page(expected))
assert actual == expected
# Round trip two events -> event_page -> events.
expected = [event_doc1, event_doc2]
actual = list(event_model.unpack_event_page(
event_model.pack_event_page(*expected)))
assert actual == expected
# Round trip three events -> event_page -> events.
expected = [event_doc1, event_doc2, event_doc3]
actual = list(event_model.unpack_event_page(
event_model.pack_event_page(*expected)))
assert actual == expected
# Round trip on docs that don't have a filled key
unfilled_doc1 = event_doc1
unfilled_doc1.pop('filled')
unfilled_doc2 = event_doc2
unfilled_doc2.pop('filled')
unfilled_doc3 = event_doc3
unfilled_doc3.pop('filled')
expected = [unfilled_doc1, unfilled_doc2, unfilled_doc3]
actual = list(event_model.unpack_event_page(
event_model.pack_event_page(*expected)))
for doc in actual:
doc.pop('filled')
assert actual == expected
# Round trip one datum -> datum_page -> datum.
expected = datum_doc1
actual, = event_model.unpack_datum_page(
event_model.pack_datum_page(expected))
assert actual == expected
# Round trip two datum -> datum_page -> datum.
expected = [datum_doc1, datum_doc2]
actual = list(event_model.unpack_datum_page(
event_model.pack_datum_page(*expected)))
assert actual == expected
# Round trip three datum -> datum_page -> datum.
expected = [datum_doc1, datum_doc2, datum_doc3]
actual = list(event_model.unpack_datum_page(
event_model.pack_datum_page(*expected)))
assert actual == expected
# Check edge case where datum_kwargs are empty.
datum_doc1 = res_bundle.compose_datum(datum_kwargs={})
datum_doc2 = res_bundle.compose_datum(datum_kwargs={})
datum_doc3 = res_bundle.compose_datum(datum_kwargs={})
# Round trip one datum -> datum_page -> datum.
expected = datum_doc1
actual, = event_model.unpack_datum_page(
event_model.pack_datum_page(expected))
assert actual == expected
# Round trip two datum -> datum_page -> datum.
expected = [datum_doc1, datum_doc2]
actual = list(event_model.unpack_datum_page(
event_model.pack_datum_page(*expected)))
assert actual == expected
# Round trip three datum -> datum_page -> datum.
expected = [datum_doc1, datum_doc2, datum_doc3]
actual = list(event_model.unpack_datum_page(
event_model.pack_datum_page(*expected)))
assert actual == expected
def test_bulk_events_to_event_page(tmp_path):
run_bundle = event_model.compose_run()
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
desc_bundle_baseline = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
path_root = str(tmp_path)
res_bundle = run_bundle.compose_resource(
spec='TIFF', root=path_root, resource_path='stack.tiff',
resource_kwargs={})
datum_doc1 = res_bundle.compose_datum(datum_kwargs={'slice': 5})
datum_doc2 = res_bundle.compose_datum(datum_kwargs={'slice': 10})
event1 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc1['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
event2 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc2['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=2)
event3 = desc_bundle_baseline.compose_event(
data={'motor': 0},
timestamps={'motor': 0},
seq_num=1)
primary_event_page = event_model.pack_event_page(event1, event2)
baseline_event_page = event_model.pack_event_page(event3)
bulk_events = {'primary': [event1, event2], 'baseline': [event3]}
pages = event_model.bulk_events_to_event_pages(bulk_events)
assert tuple(pages) == (primary_event_page, baseline_event_page)
def test_sanitize_doc():
run_bundle = event_model.compose_run()
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
desc_bundle_baseline = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
event1 = desc_bundle.compose_event(
data={'motor': 0, 'image': numpy.ones((512, 512))},
timestamps={'motor': 0, 'image': 0}, filled={'image': True},
seq_num=1)
event2 = desc_bundle.compose_event(
data={'motor': 0, 'image': numpy.ones((512, 512))},
timestamps={'motor': 0, 'image': 0}, filled={'image': True},
seq_num=2)
event3 = desc_bundle_baseline.compose_event(
data={'motor': 0},
timestamps={'motor': 0},
seq_num=1)
event_page = event_model.pack_event_page(event1, event2)
bulk_events = {'primary': [event1, event2], 'baseline': [event3]}
json.dumps(event_model.sanitize_doc(event_page))
json.dumps(event_model.sanitize_doc(bulk_events))
json.dumps(event_model.sanitize_doc(event1))
def test_bulk_datum_to_datum_page():
run_bundle = event_model.compose_run()
res_bundle = run_bundle.compose_resource(
spec='TIFF', root='/tmp', resource_path='stack.tiff',
resource_kwargs={})
datum1 = res_bundle.compose_datum(datum_kwargs={'slice': 5})
datum2 = res_bundle.compose_datum(datum_kwargs={'slice': 10})
actual = event_model.pack_datum_page(datum1, datum2)
bulk_datum = {'resource': res_bundle.resource_doc['uid'],
'datum_kwarg_list': [datum1['datum_kwargs'],
datum2['datum_kwargs']],
'datum_ids': [datum1['datum_id'], datum2['datum_id']]}
expected = event_model.bulk_datum_to_datum_page(bulk_datum)
assert actual == expected
def test_document_router_smoke_test():
dr = event_model.DocumentRouter()
run_bundle = event_model.compose_run()
dr('start', run_bundle.start_doc)
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
dr('descriptor', desc_bundle.descriptor_doc)
desc_bundle_baseline = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
dr('descriptor', desc_bundle_baseline.descriptor_doc)
res_bundle = run_bundle.compose_resource(
spec='TIFF', root='/tmp', resource_path='stack.tiff',
resource_kwargs={})
dr('resource', res_bundle.resource_doc)
datum_doc1 = res_bundle.compose_datum(datum_kwargs={'slice': 5})
datum_doc2 = res_bundle.compose_datum(datum_kwargs={'slice': 10})
dr('datum', datum_doc1)
dr('datum', datum_doc2)
event1 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc1['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
dr('event', event1)
event2 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc2['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=2)
dr('event', event2)
event3 = desc_bundle_baseline.compose_event(
data={'motor': 0},
timestamps={'motor': 0},
seq_num=1)
dr('event', event3)
dr('stop', run_bundle.compose_stop())
def test_filler(tmp_path):
class DummyHandler:
def __init__(self, resource_path, a, b):
assert a == 1
assert b == 2
assert resource_path == str(tmp_path / "stack.tiff")
def __call__(self, c, d):
assert c == 3
assert d == 4
return numpy.ones((5, 5))
path_root = str(tmp_path)
reg = {'DUMMY': DummyHandler}
filler = event_model.Filler(reg, inplace=True)
run_bundle = event_model.compose_run()
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
desc_bundle_baseline = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
res_bundle = run_bundle.compose_resource(
spec='DUMMY', root=path_root, resource_path='stack.tiff',
resource_kwargs={'a': 1, 'b': 2})
datum_doc = res_bundle.compose_datum(datum_kwargs={'c': 3, 'd': 4})
raw_event = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
assert isinstance(event['data']['image'], str)
filler('event', event)
stop_doc = run_bundle.compose_stop()
filler('stop', stop_doc)
assert event['data']['image'].shape == (5, 5)
assert not filler._closed
filler.close()
assert filler._closed
# Test context manager with Event.
with event_model.Filler(reg, inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
name, doc = filler('event', event)
assert name == 'event'
assert doc is event
filler('stop', stop_doc)
assert not filler._closed
assert event['data']['image'].shape == (5, 5)
assert filler._closed
# Test context manager with EventPage.
with event_model.Filler(reg, inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
name, doc = filler('event_page', event_page)
assert name == 'event_page'
assert doc is event_page
filler('stop', stop_doc)
assert not filler._closed
assert event_page['data']['image'][0].shape == (5, 5)
assert filler._closed
# Test undefined handler spec
with event_model.Filler({}, inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
assert isinstance(event['data']['image'], str)
with pytest.raises(event_model.UndefinedAssetSpecification):
filler('event', event)
# Test exclude and include.
with pytest.raises(ValueError):
event_model.Filler({}, include=[], exclude=[], inplace=True)
with event_model.Filler(reg, exclude=['image'], inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
assert isinstance(event['data']['image'], str)
filler('event', event)
filler('stop', stop_doc)
with event_model.Filler(reg, include=['image'], inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
filler('event', event)
filler('stop', stop_doc)
assert not filler._closed
assert event['data']['image'].shape == (5, 5)
with event_model.Filler(reg, include=['image', 'EXTRA THING'],
inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
filler('event', event)
filler('stop', stop_doc)
assert not filler._closed
assert event['data']['image'].shape == (5, 5)
class DummyHandlerRootMapTest:
def __init__(self, resource_path, a, b):
assert a == 1
assert b == 2
assert resource_path == str(tmp_path / "moved" / "stack.tiff")
def __call__(self, c, d):
assert c == 3
assert d == 4
return numpy.ones((5, 5))
with event_model.Filler({'DUMMY': DummyHandlerRootMapTest},
root_map={path_root: str(tmp_path / "moved")},
inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
filler('event', event)
filler('stop', stop_doc)
assert not filler._closed
assert event['data']['image'].shape == (5, 5)
# Test verify_filled.
with pytest.raises(event_model.UnfilledData):
event_model.verify_filled(event_model.pack_event_page(raw_event))
event_model.verify_filled(event_model.pack_event_page(event))
# Test inplace.
with event_model.Filler(reg, inplace=True) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
# Test event()
event = copy.deepcopy(raw_event)
name, filled_event = filler('event', event)
assert filled_event is event
event = copy.deepcopy(raw_event)
# Test fill_event()
filled_event = filler.fill_event(event)
assert filled_event is event
# Test event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
_, filled_event_page = filler('event_page', event_page)
assert filled_event_page is event_page
# Test fill_event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
filled_event_page = filler.fill_event_page(event_page)
assert filled_event_page is event_page
# Test fill_event and fill_event_page again with inplace=False.
# Test fill_event()
filled_event = filler.fill_event(event, inplace=False)
assert filled_event is not event
# Test fill_event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
filled_event_page = filler.fill_event_page(event_page, inplace=False)
assert filled_event_page is not event_page
with event_model.Filler(reg, inplace=False) as filler:
filler('start', run_bundle.start_doc)
filler('descriptor', desc_bundle.descriptor_doc)
filler('descriptor', desc_bundle_baseline.descriptor_doc)
filler('resource', res_bundle.resource_doc)
filler('datum', datum_doc)
event = copy.deepcopy(raw_event)
name, filled_event = filler('event', event)
assert filled_event is not event
assert isinstance(event['data']['image'], str)
event = copy.deepcopy(raw_event)
# Test fill_event()
filled_event = filler.fill_event(event)
assert filled_event is not event
# Test event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
_, filled_event_page = filler('event_page', event_page)
assert filled_event_page is not event_page
# Test fill_event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
filled_event_page = filler.fill_event_page(event_page)
assert filled_event_page is not event_page
# Test fill_event and fill_event_page again with inplace=True.
# Test fill_event()
filled_event = filler.fill_event(event, inplace=True)
assert filled_event is event
# Test fill_event_page()
event_page = event_model.pack_event_page(copy.deepcopy(raw_event))
filled_event_page = filler.fill_event_page(event_page, inplace=True)
assert filled_event_page is event_page
with pytest.warns(UserWarning):
filler = event_model.Filler(reg)
def test_rechunk_event_pages():
def event_page_gen(page_size, num_pages):
"""
Generator event_pages for testing.
"""
data_keys = ['x', 'y', 'z']
array_keys = ['seq_num', 'time', 'uid']
for i in range(num_pages):
yield {'descriptor': 'DESCRIPTOR',
**{key: list(range(page_size)) for key in array_keys},
'data': {key: list(range(page_size)) for key in data_keys},
'timestamps': {key: list(range(page_size)) for key in data_keys},
'filled': {key: list(range(page_size)) for key in data_keys}}
# Get a list of event pages of size 13.
event_pages = list(event_page_gen(13, 31))
# Change the size of the event_pages to size 7.
event_pages_7 = list(event_model.rechunk_event_pages(event_pages, 7))
assert [7] * 57 + [4] == [len(page['uid']) for page in event_pages_7]
# Change the size back to 13.
event_pages_13 = event_model.rechunk_event_pages(event_pages_7, 13)
# Check that it is equal to the original list of event_pages.
assert event_pages == list(event_pages_13)
def test_rechunk_datum_pages():
def datum_page_gen(page_size, num_pages):
"""
Generator datum_pages for testing.
"""
data_keys = ['x', 'y', 'z']
array_keys = ['datum_id']
for i in range(num_pages):
yield {'resource': 'RESOURCE',
**{key: list(range(page_size)) for key in array_keys},
'datum_kwargs': {key: list(range(page_size))
for key in data_keys}}
# Get a list of datum pages of size 13.
datum_pages = list(datum_page_gen(13, 31))
# Change the size of the datum_pages to size 7.
datum_pages_7 = list(event_model.rechunk_datum_pages(datum_pages, 7))
assert [7] * 57 + [4] == [len(page['datum_id']) for page in datum_pages_7]
# Change the size back to 13.
datum_pages_13 = event_model.rechunk_datum_pages(datum_pages_7, 13)
# Check that it is equal to the original list of datum_pages.
assert datum_pages == list(datum_pages_13)
def test_run_router():
bundle = event_model.compose_run()
docs = []
start_doc, compose_descriptor, compose_resource, compose_stop = bundle
docs.append(('start', start_doc))
bundle = compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
primary_descriptor_doc, compose_primary_event, compose_event_page = bundle
docs.append(('descriptor', primary_descriptor_doc))
bundle = compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
baseline_descriptor_doc, compose_baseline_event, compose_event_page = bundle
docs.append(('descriptor', baseline_descriptor_doc))
bundle = compose_resource(
spec='TIFF', root='/tmp', resource_path='stack.tiff',
resource_kwargs={})
resource_doc, compose_datum, compose_datum_page = bundle
docs.append(('resource', resource_doc))
datum_doc = compose_datum(datum_kwargs={'slice': 5})
docs.append(('datum', datum_doc))
primary_event_doc = compose_primary_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False})
docs.append(('event', primary_event_doc))
baseline_event_doc = compose_baseline_event(
data={'motor': 0},
timestamps={'motor': 0})
docs.append(('event', baseline_event_doc))
stop_doc = compose_stop()
docs.append(('stop', stop_doc))
# Empty list of factories. Just make sure nothing blows up.
rr = event_model.RunRouter([])
for name, doc in docs:
rr(name, doc)
# A factory that rejects all runs.
def null_factory(name, doc):
return [], []
rr = event_model.RunRouter([null_factory])
for name, doc in docs:
rr(name, doc)
# A factory that accepts all runs.
collected = []
def collector(name, doc):
if name == 'event_page':
name = 'event'
doc, = event_model.unpack_event_page(doc)
elif name == 'datum_page':
name = 'datum'
doc, = event_model.unpack_datum_page(doc)
collected.append((name, doc))
def all_factory(name, doc):
collector(name, doc)
return [collector], []
rr = event_model.RunRouter([all_factory])
for name, doc in docs:
rr(name, doc)
assert collected == docs
collected.clear()
# A factory that returns a subfactory interested in 'baseline' only.
def subfactory(name, doc):
if doc.get('name') == 'baseline':
return [collector]
return []
def factory_with_subfactory_only(name, doc):
return [], [subfactory]
rr = event_model.RunRouter([factory_with_subfactory_only])
for name, doc in docs:
rr(name, doc)
expected_item = ('event', baseline_event_doc)
unexpected_item = ('event', primary_event_doc)
assert expected_item in collected
assert unexpected_item not in collected
collected.clear()
def test_validate_order(tmp_path):
path_root = str(tmp_path)
# Make some example documents to work with.
run_bundle = event_model.compose_run()
desc_bundle = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'},
'image': {'shape': [512, 512], 'dtype': 'number',
'source': '...', 'external': 'FILESTORE:'}},
name='primary')
desc_bundle_baseline = run_bundle.compose_descriptor(
data_keys={'motor': {'shape': [], 'dtype': 'number', 'source': '...'}},
name='baseline')
res_bundle = run_bundle.compose_resource(
spec='DUMMY', root=path_root, resource_path='stack.tiff',
resource_kwargs={'a': 1, 'b': 2})
datum_doc = res_bundle.compose_datum(datum_kwargs={'c': 3, 'd': 4})
raw_event = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
raw_event2 = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={'image': False},
seq_num=1)
stop_doc = run_bundle.compose_stop()
# A run that should not throw any exceptions.
good_run = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('datum_page', event_model.pack_datum_page(datum_doc)),
('event', copy.deepcopy(raw_event)),
('event_page', event_model.pack_event_page(copy.deepcopy(raw_event))),
('stop', stop_doc)]
# Test a good run.
event_model.validate_order(good_run)
# Start doc is not the first document.
start_not_first = [('descriptor', desc_bundle.descriptor_doc),
('start', run_bundle.start_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('event', copy.deepcopy(raw_event)),
('stop', stop_doc)]
with pytest.raises(event_model.OrderError):
event_model.validate_order(start_not_first)
# Two start documents.
two_starts = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('start', run_bundle.start_doc),
('datum', datum_doc),
('event', copy.deepcopy(raw_event)),
('stop', stop_doc)]
with pytest.raises(ValueError):
event_model.validate_order(two_starts)
# Stop doc order.
bad_stop = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('stop', stop_doc),
('event', copy.deepcopy(raw_event))]
with pytest.raises(event_model.OrderError):
event_model.validate_order(bad_stop)
# Check that referenced resource is received first.
bad_resource = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('datum', datum_doc),
('resource', res_bundle.resource_doc),
('event', copy.deepcopy(raw_event)),
('stop', stop_doc)]
with pytest.raises(event_model.OrderError):
event_model.validate_order(bad_resource)
# Descriptor received after event.
late_descriptor = [('start', run_bundle.start_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('event', copy.deepcopy(raw_event)),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('stop', stop_doc)]
with pytest.raises(event_model.OrderError):
event_model.validate_order(late_descriptor)
# Events out of order.
wrong_event_order = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('event', copy.deepcopy(raw_event2)),
('event', copy.deepcopy(raw_event)),
('stop', stop_doc)]
with pytest.raises(event_model.OrderError):
event_model.validate_order(wrong_event_order)
# Got datum afer event that referenced it.
wrong_datum_order = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('event', copy.deepcopy(raw_event)),
('datum', datum_doc),
('stop', stop_doc)]
with pytest.raises(event_model.OrderError):
event_model.validate_order(wrong_datum_order)
# Check filled.keys() is the same as the external keys defined in the
# descriptor.
bad_event = desc_bundle.compose_event(
data={'motor': 0, 'image': datum_doc['datum_id']},
timestamps={'motor': 0, 'image': 0}, filled={},
seq_num=1)
wrong_filled = [('start', run_bundle.start_doc),
('descriptor', desc_bundle.descriptor_doc),
('descriptor', desc_bundle_baseline.descriptor_doc),
('resource', res_bundle.resource_doc),
('datum', datum_doc),
('event', copy.deepcopy(bad_event)),
('stop', stop_doc)]
with pytest.raises(ValueError):
event_model.validate_order(wrong_filled)