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Changelog / Änderungsprotokoll

Alle wesentlichen Änderungen an diesem Projekt werden hier dokumentiert. Format basiert auf Keep a Changelog.

[Unreleased]

Hinzugefügt / Added

  • make_source_zip.py: Source-ZIP-Builder für Linux und macOS. Erstellt ein portables Quellcode-Archiv mit allen Python-Quellen, Übersetzungen, optionalem Cython-Hotpath (.pyx), Tests und Dokumentation. Schließt Windows-Binaries (.pyd, .exe), generierte Caches und FASTA-Referenzgenome aus.
  • PACKAGING.md: Vollständige Packaging-Dokumentation mit Optionen-Matrix (Windows EXE vs. Source-ZIP), Schritt-für-Schritt-Installationsanleitung für Linux/macOS, Cython-Fallback-Erläuterung und Hinweisen zu Annotationsdaten.
  • tests/test_source_packaging.py: 14 automatisierte Tests für make_source_zip.py — Ausschlusslogik (.pyd/.exe/_index.pkl), Inklusionslogik (.pyx/.py/.json/.md), Versionslesung, ZIP-Erzeugung und ZIP-Inhalt.
  • tests/source_platform_smoke.py: Plattform-Smoke für Linux und macOS — 7 Checks (Python-Version, Pflicht-Deps real importierbar, tkinter headless-safe, ttkbootstrap headless-tolerant, Hauptmodul mit Mocks ladbar, safe_float-Logik, VCF-Erkennung mit Fixture).
  • .github/workflows/source-platform-smoke.yml: CI-Workflow für ubuntu-latest und macos-latest; installiert Kern-Deps (pip) und python3-tk (apt); führt Smoke explizit aus.
  • CODE_OF_CONDUCT.md and CONTRIBUTING.md added as repository community files.
  • Root application icon added for packaging and repository metadata.
  • llms.txt added with machine-readable project context, search phrases, important files, and Research Use Only boundaries.

Geändert / Changed

  • build_release.py now builds via PyInstaller in C:\_Local_DEV\codex_build\vfdistiller, mirrors the finished EXE back to dist\VFDistiller.exe, and produces the versioned release ZIP from that local artifact.
  • build_exe.bat added as a Windows build entrypoint so the project follows the current .SOFTWARE local-build workflow more directly.
  • Source Platform Smoke CI now uses actions/checkout@v6 and actions/setup-python@v6.
  • llms.txt now records the 2026-06-11 hygiene check and audience context.
  • README files now document the current GitHub-only distribution and repository privacy/ignore policy.
  • README files now lead with clearer VCF/gVCF/23andMe/FASTA discoverability language, screenshot gallery entries, and local-first bioinformatics search phrases.
  • README test instructions now clarify the split between deterministic pytest coverage and manual benchmark scripts.
  • .gitignore now covers internal test locks, secrets, private keys, installer artifacts, and LLM control files.
  • .gitignore now also covers active LOCK*.txt files and agent-internal docs/superpowers/ implementation plans so coordination files stay local.
  • Internal planning files such as PORTIERUNGSPLAN.md, DECISIONS.md, TODO.md, and DONE.md now stay local-only.
  • SECURITY.md and PRIVACY_POLICY.md updated after the Microsoft Store withdrawal.
  • pytest.ini now limits automated test collection to the maintained tests/ suite.
  • Downloaded Ensembl GTF annotation archives are no longer tracked and remain local via .gitignore.
  • START.bat now prefers the local dist\VFDistiller.exe and falls back to the Python source entry point.
  • German README/UI wording now uses real umlauts for touched end-user text.
  • .gitattributes added for stable line endings and binary asset handling.
  • Community workflows now use current actions/stale@v10 and actions/first-interaction@v3 actions.

Behoben / Fixed

  • Release packaging no longer references a non-existent README/licenses/LICENSE.de.txt; the documented license tree now matches the shipped files.
  • Removed a stale inline comment that incorrectly suggested the top-level pickle import was missing or only local-only, even though cache serialization uses it.
  • Removed stale contributing-template placeholders and replaced the missing CLA reference with DCO guidance.
  • Performance benchmark scripts no longer expose a test_correctness() function that pytest can miscollect as a fixture-based test.
  • Cython accelerator console logging no longer crashes benchmark scripts on Windows cp1252 terminals.
  • Performance benchmark scripts now tolerate Windows console encodings for their own status output.
  • LightDB lookups now close SQLite connections in a finally block, preventing file-lock leaks on cursor or setup failures.
  • LightDB lookup setup also handles sqlite3.connect() failures without masking the original fallback result.

Entfernt / Removed

  • Removed PORTIERUNGSPLAN.md from the public repository index; the Linux/macOS desktop portability plan remains a local planning file.
  • Removed the planned Web/PWA companion track from the active porting strategy.
  • Removed stale internal cleanup concept notes from the public README documentation tree.

[1.0.0] - YYYY-MM-DD

Hinzugefügt / Added

  • Erstveröffentlichung / Initial release